Please check as follows to ensure that your No Pay leave and Absent leave are linked to your payroll for deduction:
Leave module
Click Setup and select Leave Type.
Select your No Pay or Absent leave.
In the Appearance tab, ensure the Leave Function is set as Absent for Absent leave and NPL for No Pay leave.
Click Save.
Payroll module
Click Pay Details and select the employee.
Click the Leave Setup tab.
Ensure the Auto Retrieval From Leave Module, Absent, and NPL are enabled.
Click Save.
Go to the Pay Records and highlight the affected employees.
Click Reprocess and check again.
If the issue persists, then click Setup and select Pay Group Setup.
Click the Leave Cut Off Date three-dot button.
Ensure the employee's leave application is within the leave cycle defined here for the NPL and Absent.